J3_3J6Y_043
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 3J6Y|1|2S|G|2549, 3J6Y|1|2S|U|2550, 3J6Y|1|2S|U|2551, 3J6Y|1|2S|C|2552, 3J6Y|1|2S|U|2553, 3J6Y|1|2S|A|2554, 3J6Y|1|2S|U|2558, 3J6Y|1|2S|U|2559, 3J6Y|1|2S|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_043 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.2375
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|A|2529
3J6Y|1|2S|G|2530
3J6Y|1|2S|C|2531
3J6Y|1|2S|U|2532
*
3J6Y|1|2S|A|2547
3J6Y|1|2S|C|2548
3J6Y|1|2S|G|2549
3J6Y|1|2S|U|2550
3J6Y|1|2S|U|2551
3J6Y|1|2S|C|2552
3J6Y|1|2S|U|2553
3J6Y|1|2S|A|2554
3J6Y|1|2S|G|2555
3J6Y|1|2S|C|2556
3J6Y|1|2S|A|2557
3J6Y|1|2S|U|2558
3J6Y|1|2S|U|2559
3J6Y|1|2S|C|2560
3J6Y|1|2S|A|2561
3J6Y|1|2S|A|2562
3J6Y|1|2S|G|2563
*
3J6Y|1|2S|U|2578
3J6Y|1|2S|G|2579
3J6Y|1|2S|A|2580
3J6Y|1|2S|U|2581
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 65
- 60S ribosomal protein L25
- Chain 67
- 60S ribosomal protein L27
- Chain 70
- 60S ribosomal protein L30
- Chain 74
- 60S ribosomal protein L34
- Chain 83
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
- Chain L8
- 60S ribosomal protein L8
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