J3_3J77_005

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J77_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.2442

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J77|1|1S|C|1161
3J77|1|1S|C|1162
3J77|1|1S|A|1163
3J77|1|1S|G|1164
*
3J77|1|1S|C|1581
3J77|1|1S|U|1582
3J77|1|1S|A|1583
3J77|1|1S|G|1584
3J77|1|1S|U|1585
3J77|1|1S|A|1586
3J77|1|1S|A|1587
*
3J77|1|1S|U|1609
3J77|1|1S|G|1610
3J77|1|1S|A|1611
3J77|1|1S|U|1612
3J77|1|1S|U|1613
3J77|1|1S|A|1614
3J77|1|1S|C|1615
3J77|1|1S|G|1616

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 16

40S ribosomal protein S16

Chain 28

40S ribosomal protein S28

Chain S5

40S ribosomal protein S5