3D structure

PDB id
3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J77_006 not in the Motif Atlas
Homologous match to J3_8C3A_039
Geometric discrepancy: 0.2008
The information below is about J3_8C3A_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.3
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

3J77|1|1S|U|1168
3J77|1|1S|G|1169
3J77|1|1S|G|1170
3J77|1|1S|A|1171
*
3J77|1|1S|U|1468
3J77|1|1S|A|1469
3J77|1|1S|C|1470
*
3J77|1|1S|G|1574
3J77|1|1S|G|1575
3J77|1|1S|A|1576
3J77|1|1S|A|1577

Current chains

Chain 1S
18S ribosomal RNA

Nearby chains

Chain 16
40S ribosomal protein S16
Chain 18
40S ribosomal protein S18
Chain 19
40S ribosomal protein S19
Chain PT
Transfer RNA; tRNA
Chain S5
40S ribosomal protein S5

Coloring options:


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