J3_3J77_016

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

3J77|1|2S|A|817, 3J77|1|2S|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J77_016 not in the Motif Atlas

Homologous match to J3_5TBW_004

Geometric discrepancy: 0.2268

The information below is about J3_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3J77|1|2S|U|814
3J77|1|2S|G|815
3J77|1|2S|A|816
3J77|1|2S|A|817
3J77|1|2S|C|818
3J77|1|2S|U|819
3J77|1|2S|A|820
*
3J77|1|2S|U|905
3J77|1|2S|A|906
3J77|1|2S|G|907
*
3J77|1|2S|C|923
3J77|1|2S|G|924
3J77|1|2S|A|925
3J77|1|2S|A|926

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 65

60S ribosomal protein L15

Chain 87

60S ribosomal protein L37

Chain L2

60S ribosomal protein L2