J3_3J77_021
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 3J77|1|2S|U|1840, 3J77|1|2S|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J77_021 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.1841
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J77|1|2S|G|1488
3J77|1|2S|A|1489
3J77|1|2S|A|1490
3J77|1|2S|A|1491
*
3J77|1|2S|U|1837
3J77|1|2S|G|1838
3J77|1|2S|A|1839
3J77|1|2S|U|1840
3J77|1|2S|A|1841
3J77|1|2S|A|1842
3J77|1|2S|C|1843
*
3J77|1|2S|G|1852
3J77|1|2S|U|1853
3J77|1|2S|C|1854
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 84
- 60S ribosomal protein L34
- Chain 87
- 60S ribosomal protein L37
- Chain 89
- 60S ribosomal protein L39
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
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