J3_3J77_025
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 3J77|1|2S|G|2549, 3J77|1|2S|U|2550, 3J77|1|2S|U|2551, 3J77|1|2S|C|2552, 3J77|1|2S|U|2553, 3J77|1|2S|A|2554, 3J77|1|2S|U|2558, 3J77|1|2S|U|2559, 3J77|1|2S|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J77_025 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.2051
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3J77|1|2S|A|2529
3J77|1|2S|G|2530
3J77|1|2S|C|2531
3J77|1|2S|U|2532
*
3J77|1|2S|A|2547
3J77|1|2S|C|2548
3J77|1|2S|G|2549
3J77|1|2S|U|2550
3J77|1|2S|U|2551
3J77|1|2S|C|2552
3J77|1|2S|U|2553
3J77|1|2S|A|2554
3J77|1|2S|G|2555
3J77|1|2S|C|2556
3J77|1|2S|A|2557
3J77|1|2S|U|2558
3J77|1|2S|U|2559
3J77|1|2S|C|2560
3J77|1|2S|A|2561
3J77|1|2S|A|2562
3J77|1|2S|G|2563
*
3J77|1|2S|U|2578
3J77|1|2S|G|2579
3J77|1|2S|A|2580
3J77|1|2S|U|2581
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 75
- 60S ribosomal protein L25
- Chain 77
- 60S ribosomal protein L27
- Chain 80
- 60S ribosomal protein L30
- Chain 84
- 60S ribosomal protein L34
- Chain 93
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
- Chain L8
- 60S ribosomal protein L8
- Chain S1
- 40S ribosomal protein S1
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