J3_3J78_009
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 3J78|1|1S|A|1217, 3J78|1|1S|G|1445, 3J78|1|1S|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J78_009 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.2048
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3J78|1|1S|C|1215
3J78|1|1S|C|1216
3J78|1|1S|A|1217
3J78|1|1S|G|1218
3J78|1|1S|A|1219
3J78|1|1S|C|1220
*
3J78|1|1S|G|1263
3J78|1|1S|G|1264
3J78|1|1S|G|1265
3J78|1|1S|U|1266
3J78|1|1S|G|1267
*
3J78|1|1S|U|1442
3J78|1|1S|U|1443
3J78|1|1S|A|1444
3J78|1|1S|G|1445
3J78|1|1S|A|1446
3J78|1|1S|C|1447
3J78|1|1S|G|1448
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 10
- 40S ribosomal protein S10
- Chain 12
- 40S ribosomal protein S12
- Chain 29
- 40S ribosomal protein S29
- Chain 31
- 40S ribosomal protein S31
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