J3_3J78_021

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

3J78|1|2S|A|1482, 3J78|1|2S|U|1484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J78_021 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1801

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

3J78|1|2S|U|1479
3J78|1|2S|G|1480
3J78|1|2S|A|1481
3J78|1|2S|A|1482
3J78|1|2S|G|1483
3J78|1|2S|U|1484
3J78|1|2S|G|1485
*
3J78|1|2S|C|1857
3J78|1|2S|A|1858
3J78|1|2S|A|1859
*
3J78|1|2S|U|1871
3J78|1|2S|C|1872
3J78|1|2S|U|1873
3J78|1|2S|A|1874

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 69

60S ribosomal protein L19

Chain 84

60S ribosomal protein L34