J3_3J78_024

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J78_024 not in the Motif Atlas

Geometric match to J3_8C3A_054

Geometric discrepancy: 0.2627

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

3J78|1|2S|C|1631
3J78|1|2S|A|1632
*
3J78|1|2S|U|1641
3J78|1|2S|A|1642
3J78|1|2S|A|1643
3J78|1|2S|C|1644
3J78|1|2S|U|1645
*
3J78|1|2S|A|1810
3J78|1|2S|G|1811

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 77

60S ribosomal protein L27

Chain 84

60S ribosomal protein L34