J3_3J79_006
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 3J79|1|A|A|936, 3J79|1|A|G|1043
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_006 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0952
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J79|1|A|U|933
3J79|1|A|G|934
3J79|1|A|A|935
3J79|1|A|A|936
3J79|1|A|C|937
3J79|1|A|U|938
3J79|1|A|A|939
*
3J79|1|A|U|1024
3J79|1|A|A|1025
3J79|1|A|G|1026
*
3J79|1|A|C|1042
3J79|1|A|G|1043
3J79|1|A|A|1044
3J79|1|A|A|1045
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein uL2
- Chain P
- 60S ribosomal protein eL15
- Chain c
- 60S ribosomal protein eL37
- Chain e
- 60S ribosomal protein eL39
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