J3_3J79_009
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 3J79|1|A|A|1631, 3J79|1|A|U|1633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_009 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.24
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J79|1|A|U|1628
3J79|1|A|G|1629
3J79|1|A|A|1630
3J79|1|A|A|1631
3J79|1|A|G|1632
3J79|1|A|U|1633
3J79|1|A|G|1634
*
3J79|1|A|C|2124
3J79|1|A|A|2125
3J79|1|A|A|2126
*
3J79|1|A|U|2138
3J79|1|A|C|2139
3J79|1|A|U|2140
3J79|1|A|G|2141
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain T
- 60S ribosomal protein eL19
- Chain a
- 60S ribosomal protein eL34
Coloring options: