J3_3J79_019
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUC*GUC*GCUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 3J79|1|A|A|3246, 3J79|1|A|U|3247
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_019 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0778
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J79|1|A|U|3245
3J79|1|A|A|3246
3J79|1|A|U|3247
3J79|1|A|C|3248
*
3J79|1|A|G|3273
3J79|1|A|U|3274
3J79|1|A|C|3275
*
3J79|1|A|G|3289
3J79|1|A|C|3290
3J79|1|A|U|3291
3J79|1|A|A|3292
3J79|1|A|A|3293
3J79|1|A|U|3294
3J79|1|A|A|3295
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein uL3
- Chain K
- 60S ribosomal protein uL13
- Chain M
- 60S ribosomal protein uL14
- Chain f
- 60S ribosomal protein eL40
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