J3_3J79_021
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 3J79|1|B|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_021 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.2477
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J79|1|B|U|9
3J79|1|B|C|10
3J79|1|B|A|11
3J79|1|B|U|12
3J79|1|B|A|13
3J79|1|B|C|14
*
3J79|1|B|G|65
3J79|1|B|G|66
*
3J79|1|B|U|109
3J79|1|B|G|110
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 60S ribosomal protein uL5
- Chain Q
- 60S ribosomal protein uL16
- Chain R
- 60S ribosomal protein uL18
- Chain V
- 60S ribosomal protein eL21
Coloring options: