3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
3J7P|1|5|A|1534, 3J7P|1|5|G|1641
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J7P_003 not in the Motif Atlas
Homologous match to J3_8C3A_003
Geometric discrepancy: 0.2178
The information below is about J3_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

3J7P|1|5|U|1531
3J7P|1|5|G|1532
3J7P|1|5|A|1533
3J7P|1|5|A|1534
3J7P|1|5|C|1535
3J7P|1|5|U|1536
3J7P|1|5|A|1537
*
3J7P|1|5|U|1622
3J7P|1|5|A|1623
3J7P|1|5|G|1624
*
3J7P|1|5|C|1640
3J7P|1|5|G|1641
3J7P|1|5|A|1642
3J7P|1|5|A|1643

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
Ribosomal protein uL2
Chain N
Ribosomal protein eL15
Chain j
Ribosomal protein eL37
Chain l
Ribosomal protein eL39

Coloring options:


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