J3_3J92_009

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

3J92|1|5|U|2788, 3J92|1|5|A|2789, 3J92|1|5|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J92_009 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1408

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

3J92|1|5|G|2402
3J92|1|5|A|2403
3J92|1|5|A|2404
3J92|1|5|G|2405
*
3J92|1|5|C|2785
3J92|1|5|C|2786
3J92|1|5|A|2787
3J92|1|5|U|2788
3J92|1|5|A|2789
3J92|1|5|U|2790
3J92|1|5|C|2791
*
3J92|1|5|G|2800
3J92|1|5|U|2801
3J92|1|5|C|2802

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

eL34

Chain j

eL37

Chain l

eL39