J3_3J92_016

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

3J92|1|5|A|4464, 3J92|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J92_016 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.0934

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

3J92|1|5|U|4463
3J92|1|5|A|4464
3J92|1|5|U|4465
3J92|1|5|C|4466
*
3J92|1|5|G|4491
3J92|1|5|U|4492
3J92|1|5|U|4493
*
3J92|1|5|A|4507
3J92|1|5|C|4508
3J92|1|5|U|4509
3J92|1|5|A|4510
3J92|1|5|A|4511
3J92|1|5|U|4512
3J92|1|5|A|4513

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14