J3_3J9W_004

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

3J9W|1|AA|U|881, 3J9W|1|AA|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1708

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

3J9W|1|AA|C|835
3J9W|1|AA|U|836
3J9W|1|AA|A|837
3J9W|1|AA|A|838
*
3J9W|1|AA|U|867
3J9W|1|AA|G|868
3J9W|1|AA|C|869
3J9W|1|AA|A|870
3J9W|1|AA|G|871
*
3J9W|1|AA|C|878
3J9W|1|AA|A|879
3J9W|1|AA|U|880
3J9W|1|AA|U|881
3J9W|1|AA|A|882
3J9W|1|AA|A|883
3J9W|1|AA|G|884

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein uS2

Chain AH

30S ribosomal protein uS8

Chain AY

mRNA