J3_3J9W_005

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_005 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1111

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

3J9W|1|AA|U|953
3J9W|1|AA|G|954
3J9W|1|AA|G|955
3J9W|1|AA|A|956
*
3J9W|1|AA|U|1244
3J9W|1|AA|A|1245
3J9W|1|AA|C|1246
*
3J9W|1|AA|G|1346
3J9W|1|AA|G|1347
3J9W|1|AA|A|1348
3J9W|1|AA|A|1349

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein uS9

Chain AM

30S ribosomal protein uS13

Chain AX

Transfer RNA; tRNA