J3_3J9W_012
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 3J9W|1|AA|U|1249, 3J9W|1|AA|U|1311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_012 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.1657
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J9W|1|AA|C|1246
3J9W|1|AA|A|1247
3J9W|1|AA|A|1248
3J9W|1|AA|U|1249
3J9W|1|AA|G|1250
*
3J9W|1|AA|C|1305
3J9W|1|AA|U|1306
3J9W|1|AA|C|1307
3J9W|1|AA|A|1308
3J9W|1|AA|G|1309
3J9W|1|AA|U|1310
3J9W|1|AA|U|1311
3J9W|1|AA|C|1312
*
3J9W|1|AA|G|1343
3J9W|1|AA|C|1344
3J9W|1|AA|U|1345
3J9W|1|AA|G|1346
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AG
- 30S ribosomal protein uS7
- Chain AM
- 30S ribosomal protein uS13
Coloring options: