J3_3J9W_025

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GUUGAU*AAUCG

Length

13 nucleotides

Bulged bases

3J9W|1|BA|U|2858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_025 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.1738

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

3J9W|1|BA|C|2839
3J9W|1|BA|C|2840
*
3J9W|1|BA|G|2856
3J9W|1|BA|U|2857
3J9W|1|BA|U|2858
3J9W|1|BA|G|2859
3J9W|1|BA|A|2860
3J9W|1|BA|U|2861
*
3J9W|1|BA|A|2907
3J9W|1|BA|A|2908
3J9W|1|BA|U|2909
3J9W|1|BA|C|2910
3J9W|1|BA|G|2911

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein bL32

Chain BE

50S ribosomal protein uL3

Chain BQ

50S ribosomal protein bL17