J3_3J9W_028

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGG*CUUGA*UGACG

Length

13 nucleotides

Bulged bases

3J9W|1|AA|U|662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_028 not in the Motif Atlas

Homologous match to J3_5J7L_051

Geometric discrepancy: 0.145

The information below is about J3_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.4

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J9W|1|AA|C|595
3J9W|1|AA|G|596
3J9W|1|AA|G|597
*
3J9W|1|AA|C|660
3J9W|1|AA|U|661
3J9W|1|AA|U|662
3J9W|1|AA|G|663
3J9W|1|AA|A|664
*
3J9W|1|AA|U|760
3J9W|1|AA|G|761
3J9W|1|AA|A|762
3J9W|1|AA|C|763
3J9W|1|AA|G|764

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein uS8

Chain AO

30S ribosomal protein uS15

Chain AQ

30S ribosomal protein uS17