J3_3J9W_036

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

3J9W|1|BA|U|733, 3J9W|1|BA|G|839, 3J9W|1|BA|A|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_036 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.1985

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

3J9W|1|BA|U|730
3J9W|1|BA|G|731
3J9W|1|BA|A|732
3J9W|1|BA|U|733
3J9W|1|BA|C|734
3J9W|1|BA|U|735
3J9W|1|BA|A|736
*
3J9W|1|BA|U|820
3J9W|1|BA|A|821
3J9W|1|BA|G|822
*
3J9W|1|BA|C|838
3J9W|1|BA|G|839
3J9W|1|BA|A|840
3J9W|1|BA|A|841

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein bL34

Chain BD

50S ribosomal protein uL2