J3_3J9Z_006

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Z_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1015

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3J9Z|1|LA|C|1298
3J9Z|1|LA|G|1299
3J9Z|1|LA|G|1300
3J9Z|1|LA|A|1301
3J9Z|1|LA|A|1302
3J9Z|1|LA|G|1303
*
3J9Z|1|LA|C|1625
3J9Z|1|LA|A|1626
3J9Z|1|LA|G|1627
*
3J9Z|1|LA|C|1639
3J9Z|1|LA|A|1640
3J9Z|1|LA|A|1641
3J9Z|1|LA|G|1642

Current chains

Chain LA

23S ribosomal RNA

Nearby chains