J3_3J9Z_007

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3J9Z|1|LA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Z_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1864

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3J9Z|1|LA|C|1306
3J9Z|1|LA|A|1307
3J9Z|1|LA|A|1308
3J9Z|1|LA|G|1309
*
3J9Z|1|LA|C|1605
3J9Z|1|LA|C|1606
3J9Z|1|LA|C|1607
3J9Z|1|LA|A|1608
3J9Z|1|LA|A|1609
3J9Z|1|LA|A|1610
3J9Z|1|LA|C|1611
*
3J9Z|1|LA|G|1620
3J9Z|1|LA|U|1621
3J9Z|1|LA|G|1622

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L34