J3_3J9Z_027
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 3J9Z|1|SA|U|1240, 3J9Z|1|SA|C|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9Z_027 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.1861
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J9Z|1|SA|C|1237
3J9Z|1|SA|A|1238
3J9Z|1|SA|A|1239
3J9Z|1|SA|U|1240
3J9Z|1|SA|G|1241
*
3J9Z|1|SA|C|1296
3J9Z|1|SA|G|1297
3J9Z|1|SA|U|1298
3J9Z|1|SA|A|1299
3J9Z|1|SA|G|1300
3J9Z|1|SA|U|1301
3J9Z|1|SA|C|1302
3J9Z|1|SA|C|1303
*
3J9Z|1|SA|G|1334
3J9Z|1|SA|U|1335
3J9Z|1|SA|C|1336
3J9Z|1|SA|G|1337
Current chains
- Chain SA
- 16S ribosomal RNA
Nearby chains
- Chain SG
- 30S ribosomal protein S7
- Chain SM
- 30S ribosomal protein S13
Coloring options: