J3_3JA1_006

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1285

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3JA1|1|LA|C|1298
3JA1|1|LA|G|1299
3JA1|1|LA|G|1300
3JA1|1|LA|A|1301
3JA1|1|LA|A|1302
3JA1|1|LA|G|1303
*
3JA1|1|LA|C|1625
3JA1|1|LA|A|1626
3JA1|1|LA|G|1627
*
3JA1|1|LA|C|1639
3JA1|1|LA|A|1640
3JA1|1|LA|A|1641
3JA1|1|LA|G|1642

Current chains

Chain LA

23S ribosomal RNA

Nearby chains