J3_3JA1_026

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

3JA1|1|SA|U|1240, 3JA1|1|SA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_026 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2108

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3JA1|1|SA|C|1237
3JA1|1|SA|A|1238
3JA1|1|SA|A|1239
3JA1|1|SA|U|1240
3JA1|1|SA|G|1241
*
3JA1|1|SA|C|1296
3JA1|1|SA|G|1297
3JA1|1|SA|U|1298
3JA1|1|SA|A|1299
3JA1|1|SA|G|1300
3JA1|1|SA|U|1301
3JA1|1|SA|C|1302
3JA1|1|SA|C|1303
*
3JA1|1|SA|G|1334
3JA1|1|SA|U|1335
3JA1|1|SA|C|1336
3JA1|1|SA|G|1337

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SG

30S ribosomal protein S7

Chain SM

30S ribosomal protein S13