J3_3JBO_019

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

3JBO|1|AA|A|936, 3JBO|1|AA|G|1043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBO_019 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.1377

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3JBO|1|AA|U|933
3JBO|1|AA|G|934
3JBO|1|AA|A|935
3JBO|1|AA|A|936
3JBO|1|AA|C|937
3JBO|1|AA|U|938
3JBO|1|AA|A|939
*
3JBO|1|AA|U|1024
3JBO|1|AA|A|1025
3JBO|1|AA|G|1026
*
3JBO|1|AA|C|1042
3JBO|1|AA|G|1043
3JBO|1|AA|A|1044
3JBO|1|AA|A|1045

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AP

60S ribosomal protein eL15

Chain Ac

60S ribosomal protein eL37