J3_3JBO_023
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAAG*CAACAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 3JBO|1|AA|C|2107, 3JBO|1|AA|A|2108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBO_023 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.1163
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JBO|1|AA|G|1637
3JBO|1|AA|A|1638
3JBO|1|AA|A|1639
3JBO|1|AA|G|1640
*
3JBO|1|AA|C|2104
3JBO|1|AA|A|2105
3JBO|1|AA|A|2106
3JBO|1|AA|C|2107
3JBO|1|AA|A|2108
3JBO|1|AA|A|2109
3JBO|1|AA|C|2110
*
3JBO|1|AA|G|2119
3JBO|1|AA|U|2120
3JBO|1|AA|C|2121
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Aa
- 60S ribosomal protein eL34
- Chain Ac
- 60S ribosomal protein eL37
- Chain Ae
- 60S ribosomal protein eL39
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