J3_3JBO_032
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UAUC*GUC*GCUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 3JBO|1|AA|U|3247
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBO_032 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.1321
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JBO|1|AA|U|3245
3JBO|1|AA|A|3246
3JBO|1|AA|U|3247
3JBO|1|AA|C|3248
*
3JBO|1|AA|G|3273
3JBO|1|AA|U|3274
3JBO|1|AA|C|3275
*
3JBO|1|AA|G|3289
3JBO|1|AA|C|3290
3JBO|1|AA|U|3291
3JBO|1|AA|A|3292
3JBO|1|AA|A|3293
3JBO|1|AA|U|3294
3JBO|1|AA|A|3295
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein uL3
- Chain AK
- 60S ribosomal protein uL13
- Chain AM
- 60S ribosomal protein uL14
Coloring options: