3D structure

PDB id
3JBO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
5.8 Å

Loop

Sequence
UAUC*GUC*GCUAAUA
Length
14 nucleotides
Bulged bases
3JBO|1|AA|U|3247
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JBO_032 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.1321
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

3JBO|1|AA|U|3245
3JBO|1|AA|A|3246
3JBO|1|AA|U|3247
3JBO|1|AA|C|3248
*
3JBO|1|AA|G|3273
3JBO|1|AA|U|3274
3JBO|1|AA|C|3275
*
3JBO|1|AA|G|3289
3JBO|1|AA|C|3290
3JBO|1|AA|U|3291
3JBO|1|AA|A|3292
3JBO|1|AA|A|3293
3JBO|1|AA|U|3294
3JBO|1|AA|A|3295

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AE
60S ribosomal protein uL3
Chain AK
60S ribosomal protein uL13
Chain AM
60S ribosomal protein uL14

Coloring options:


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