J3_3JBO_034
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBO_034 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.2329
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
3JBO|1|AB|U|9
3JBO|1|AB|C|10
3JBO|1|AB|A|11
3JBO|1|AB|U|12
3JBO|1|AB|A|13
3JBO|1|AB|C|14
*
3JBO|1|AB|G|65
3JBO|1|AB|G|66
*
3JBO|1|AB|U|109
3JBO|1|AB|G|110
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 60S ribosomal protein uL16
- Chain AR
- 60S ribosomal protein uL18
- Chain AV
- 60S ribosomal protein eL21
Coloring options: