J3_3JBO_035

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AGAUUAAG*CGCGUAAAU*AGU

Length

20 nucleotides

Bulged bases

3JBO|1|A|A|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBO_035 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.123

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

3JBO|1|A|A|41
3JBO|1|A|G|42
3JBO|1|A|A|43
3JBO|1|A|U|44
3JBO|1|A|U|45
3JBO|1|A|A|46
3JBO|1|A|A|47
3JBO|1|A|G|48
*
3JBO|1|A|C|437
3JBO|1|A|G|438
3JBO|1|A|C|439
3JBO|1|A|G|440
3JBO|1|A|U|441
3JBO|1|A|A|442
3JBO|1|A|A|443
3JBO|1|A|A|444
3JBO|1|A|U|445
*
3JBO|1|A|A|470
3JBO|1|A|G|471
3JBO|1|A|U|472

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein uS4

Chain L

40S ribosomal protein eS8

Chain Q

40S ribosomal protein uS12