J3_3JBO_039
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CAAAG*CCCCAUAGAG*CAUAG
- Length
- 20 nucleotides
- Bulged bases
- 3JBO|1|AA|U|218
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBO_039 not in the Motif Atlas
- Geometric match to J3_8VTW_041
- Geometric discrepancy: 0.2208
- The information below is about J3_8VTW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.1
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JBO|1|AA|C|193
3JBO|1|AA|A|194
3JBO|1|AA|A|195
3JBO|1|AA|A|196
3JBO|1|AA|G|197
*
3JBO|1|AA|C|213
3JBO|1|AA|C|214
3JBO|1|AA|C|215
3JBO|1|AA|C|216
3JBO|1|AA|A|217
3JBO|1|AA|U|218
3JBO|1|AA|A|219
3JBO|1|AA|G|220
3JBO|1|AA|A|221
3JBO|1|AA|G|222
*
3JBO|1|AA|C|234
3JBO|1|AA|A|235
3JBO|1|AA|U|236
3JBO|1|AA|A|237
3JBO|1|AA|G|238
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein uL4
- Chain AZ
- 60S ribosomal protein uL24
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