J3_3JBP_004
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- AUUC*GAACAACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 3JBP|1|A|C|1003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_004 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1365
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
3JBP|1|A|A|950
3JBP|1|A|U|951
3JBP|1|A|U|952
3JBP|1|A|C|953
*
3JBP|1|A|G|997
3JBP|1|A|A|998
3JBP|1|A|A|999
3JBP|1|A|C|1000
3JBP|1|A|A|1001
3JBP|1|A|A|1002
3JBP|1|A|C|1003
3JBP|1|A|U|1004
3JBP|1|A|G|1005
*
3JBP|1|A|C|1012
3JBP|1|A|A|1013
3JBP|1|A|U|1014
3JBP|1|A|U|1015
3JBP|1|A|U|1016
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein eS26
- Chain Ah
- 60S ribosomal protein eL43
- Chain B
- 40S ribosomal protein eS1
- Chain P
- 40S ribosomal protein uS11
- Chain U
- 40S ribosomal protein uS15
Coloring options: