J3_3JBP_013
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 3JBP|1|A|U|1719, 3JBP|1|A|G|1836
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JBP_013 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.2299
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
3JBP|1|A|C|1716
3JBP|1|A|A|1717
3JBP|1|A|C|1718
3JBP|1|A|U|1719
3JBP|1|A|G|1720
*
3JBP|1|A|C|1830
3JBP|1|A|G|1831
3JBP|1|A|U|1832
3JBP|1|A|G|1833
3JBP|1|A|A|1834
3JBP|1|A|U|1835
3JBP|1|A|G|1836
3JBP|1|A|G|1837
*
3JBP|1|A|C|1868
3JBP|1|A|G|1869
3JBP|1|A|A|1870
3JBP|1|A|G|1871
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein eS25
- Chain 7
- Transfer RNA; tRNA
- Chain I
- 40S ribosomal protein uS7
- Chain S
- 40S ribosomal protein uS13
- Chain Y
- 40S ribosomal protein eS19
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