J3_3JBP_032

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UAUC*GUC*GCUAAUA

Length

14 nucleotides

Bulged bases

3JBP|1|AA|A|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBP_032 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.1241

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

3JBP|1|AA|U|3245
3JBP|1|AA|A|3246
3JBP|1|AA|U|3247
3JBP|1|AA|C|3248
*
3JBP|1|AA|G|3273
3JBP|1|AA|U|3274
3JBP|1|AA|C|3275
*
3JBP|1|AA|G|3289
3JBP|1|AA|C|3290
3JBP|1|AA|U|3291
3JBP|1|AA|A|3292
3JBP|1|AA|A|3293
3JBP|1|AA|U|3294
3JBP|1|AA|A|3295

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AK

60S ribosomal protein uL13

Chain AM

60S ribosomal protein uL14

Chain Af

60S ribosomal protein eL40