J3_3JBV_017

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3JBV|1|b|A|1609, 3JBV|1|b|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBV_017 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2542

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

3JBV|1|b|C|1306
3JBV|1|b|A|1307
3JBV|1|b|A|1308
3JBV|1|b|G|1309
*
3JBV|1|b|C|1605
3JBV|1|b|C|1606
3JBV|1|b|C|1607
3JBV|1|b|A|1608
3JBV|1|b|A|1609
3JBV|1|b|A|1610
3JBV|1|b|C|1611
*
3JBV|1|b|G|1620
3JBV|1|b|U|1621
3JBV|1|b|G|1622

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 6

50S ribosomal protein L34