J3_3JBV_040

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JBV_040 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.138

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3JBV|1|b|G|1424
3JBV|1|b|G|1425
3JBV|1|b|G|1426
3JBV|1|b|A|1427
3JBV|1|b|C|1428
3JBV|1|b|G|1429
*
3JBV|1|b|C|1564
3JBV|1|b|C|1565
*
3JBV|1|b|G|1568
3JBV|1|b|A|1569
3JBV|1|b|A|1570
3JBV|1|b|A|1571
3JBV|1|b|A|1572
3JBV|1|b|G|1573
3JBV|1|b|C|1574

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain c

50S ribosomal protein L2