J3_3JCE_006

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCE_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1246

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3JCE|1|A|C|1298
3JCE|1|A|G|1299
3JCE|1|A|G|1300
3JCE|1|A|A|1301
3JCE|1|A|A|1302
3JCE|1|A|G|1303
*
3JCE|1|A|C|1625
3JCE|1|A|A|1626
3JCE|1|A|G|1627
*
3JCE|1|A|C|1639
3JCE|1|A|A|1640
3JCE|1|A|A|1641
3JCE|1|A|G|1642

Current chains

Chain A

23 ribosomal RNA

Nearby chains