J3_3JCE_007

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3JCE|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCE_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1413

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3JCE|1|A|C|1306
3JCE|1|A|A|1307
3JCE|1|A|A|1308
3JCE|1|A|G|1309
*
3JCE|1|A|C|1605
3JCE|1|A|C|1606
3JCE|1|A|C|1607
3JCE|1|A|A|1608
3JCE|1|A|A|1609
3JCE|1|A|A|1610
3JCE|1|A|C|1611
*
3JCE|1|A|G|1620
3JCE|1|A|U|1621
3JCE|1|A|G|1622

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34