J3_3JCE_033

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCE_033 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1215

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3JCE|1|A|G|1424
3JCE|1|A|G|1425
3JCE|1|A|G|1426
3JCE|1|A|A|1427
3JCE|1|A|C|1428
3JCE|1|A|G|1429
*
3JCE|1|A|C|1564
3JCE|1|A|C|1565
*
3JCE|1|A|G|1568
3JCE|1|A|A|1569
3JCE|1|A|A|1570
3JCE|1|A|A|1571
3JCE|1|A|A|1572
3JCE|1|A|G|1573
3JCE|1|A|C|1574

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2