J3_3JCJ_017

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

3JCJ|1|g|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCJ_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1583

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

3JCJ|1|g|C|826
3JCJ|1|g|U|827
3JCJ|1|g|U|828
3JCJ|1|g|G|829
*
3JCJ|1|g|C|857
3JCJ|1|g|G|858
3JCJ|1|g|G|859
3JCJ|1|g|A|860
3JCJ|1|g|G|861
*
3JCJ|1|g|C|868
3JCJ|1|g|G|869
3JCJ|1|g|U|870
3JCJ|1|g|U|871
3JCJ|1|g|A|872
3JCJ|1|g|A|873
3JCJ|1|g|G|874

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 2

30S ribosomal protein S21

Chain j

30S ribosomal protein S2

Chain p

30S ribosomal protein S8