J3_3JCJ_026

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

3JCJ|1|g|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCJ_026 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.187

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3JCJ|1|g|C|1237
3JCJ|1|g|A|1238
3JCJ|1|g|A|1239
3JCJ|1|g|U|1240
3JCJ|1|g|G|1241
*
3JCJ|1|g|C|1296
3JCJ|1|g|G|1297
3JCJ|1|g|U|1298
3JCJ|1|g|A|1299
3JCJ|1|g|G|1300
3JCJ|1|g|U|1301
3JCJ|1|g|C|1302
3JCJ|1|g|C|1303
*
3JCJ|1|g|G|1334
3JCJ|1|g|U|1335
3JCJ|1|g|C|1336
3JCJ|1|g|G|1337

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S7

Chain s

30S ribosomal protein S13