3D structure

PDB id
3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3JCJ_032 not in the Motif Atlas
Homologous match to J3_5J7L_069
Geometric discrepancy: 0.112
The information below is about J3_5J7L_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

3JCJ|1|A|G|1424
3JCJ|1|A|G|1425
3JCJ|1|A|G|1426
3JCJ|1|A|A|1427
3JCJ|1|A|C|1428
3JCJ|1|A|G|1429
*
3JCJ|1|A|C|1564
3JCJ|1|A|C|1565
*
3JCJ|1|A|G|1568
3JCJ|1|A|A|1569
3JCJ|1|A|A|1570
3JCJ|1|A|A|1571
3JCJ|1|A|A|1572
3JCJ|1|A|G|1573
3JCJ|1|A|C|1574

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2

Coloring options:


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