J3_3JCN_007

3D structure

PDB id

3JCN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association: Initiation Complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3JCN|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JCN_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1579

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3JCN|1|A|C|1306
3JCN|1|A|A|1307
3JCN|1|A|A|1308
3JCN|1|A|G|1309
*
3JCN|1|A|C|1605
3JCN|1|A|C|1606
3JCN|1|A|C|1607
3JCN|1|A|A|1608
3JCN|1|A|A|1609
3JCN|1|A|A|1610
3JCN|1|A|C|1611
*
3JCN|1|A|G|1620
3JCN|1|A|U|1621
3JCN|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34