J3_3JCS_003
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAACUA*UCG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 3JCS|1|1|A|868, 3JCS|1|1|G|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCS_003 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.1742
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3JCS|1|1|U|865
3JCS|1|1|G|866
3JCS|1|1|A|867
3JCS|1|1|A|868
3JCS|1|1|C|869
3JCS|1|1|U|870
3JCS|1|1|A|871
*
3JCS|1|1|U|956
3JCS|1|1|C|957
3JCS|1|1|G|958
*
3JCS|1|1|C|974
3JCS|1|1|G|975
3JCS|1|1|A|976
3JCS|1|1|A|977
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- ribosomal protein L2
- Chain M
- ribosomal protein L15e
- Chain j
- ribosomal protein L37e
- Chain l
- ribosomal protein L39e
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