J3_3JCS_005
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGAGCG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 3JCS|1|1|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCS_005 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.1353
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
3JCS|1|1|U|1586
3JCS|1|1|G|1587
3JCS|1|1|G|1588
3JCS|1|1|A|1589
3JCS|1|1|G|1590
3JCS|1|1|C|1591
3JCS|1|1|G|1592
*
3JCS|1|2|C|40
3JCS|1|2|A|41
3JCS|1|2|A|42
*
3JCS|1|2|U|54
3JCS|1|2|C|55
3JCS|1|2|U|56
3JCS|1|2|G|57
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 3
- 26S gamma ribosomal RNA
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- ribosomal protein L19e
- Chain h
- ribosomal protein L34e
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