J3_3JCS_006
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAG*UCAUCAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 3JCS|1|2|U|23, 3JCS|1|2|C|24
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCS_006 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.1695
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JCS|1|1|G|1595
3JCS|1|1|A|1596
3JCS|1|1|A|1597
3JCS|1|1|G|1598
*
3JCS|1|2|U|20
3JCS|1|2|C|21
3JCS|1|2|A|22
3JCS|1|2|U|23
3JCS|1|2|C|24
3JCS|1|2|A|25
3JCS|1|2|C|26
*
3JCS|1|2|G|35
3JCS|1|2|U|36
3JCS|1|2|C|37
Current chains
- Chain 1
- 26S alpha ribosomal RNA
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain h
- ribosomal protein L34e
- Chain j
- ribosomal protein L37e
- Chain l
- ribosomal protein L39e
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