J3_3JCS_008
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 3JCS|1|2|A|1131
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCS_008 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.1475
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3JCS|1|2|C|1092
3JCS|1|2|U|1093
3JCS|1|2|C|1094
*
3JCS|1|2|G|1118
3JCS|1|2|A|1119
3JCS|1|2|A|1120
*
3JCS|1|2|U|1129
3JCS|1|2|A|1130
3JCS|1|2|A|1131
3JCS|1|2|A|1132
3JCS|1|2|A|1133
3JCS|1|2|G|1134
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 8
- 5S ribosomal RNA; 5S rRNA
- Chain D
- ribosomal protein L5
- Chain O
- ribosomal protein L18
- Chain S
- ribosomal protein L21e
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