J3_3JCS_009
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UAAC*GUU*ACUGACA
- Length
- 14 nucleotides
- Bulged bases
- 3JCS|1|2|A|1326, 3JCS|1|2|A|1327
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCS_009 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.1481
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JCS|1|2|U|1325
3JCS|1|2|A|1326
3JCS|1|2|A|1327
3JCS|1|2|C|1328
*
3JCS|1|2|G|1353
3JCS|1|2|U|1354
3JCS|1|2|U|1355
*
3JCS|1|2|A|1369
3JCS|1|2|C|1370
3JCS|1|2|U|1371
3JCS|1|2|G|1372
3JCS|1|2|A|1373
3JCS|1|2|C|1374
3JCS|1|2|A|1375
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- ribosomal protein L3
- Chain H
- ribosomal protein L13
- Chain J
- ribosomal protein L14
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